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By Dr. Priyom Bose, Ph.D. Reviewed by Danielle Ellis, B.Sc.

What happens after HIV infection?
Evolution of HIV diagnostic assays
Conclusions
References
Further reading

Acquired immunodeficiency syndrome (AIDS) is caused by the human immunodeficiency virus (HIV) that attacks the body’s immune system, making it vulnerable to all infections. One of the major concerns of the early AIDS epidemic that began in 1981 was the lack of proper diagnostic measures to identify infected individuals.1 Since the development of the first HIV diagnostic assay in 1985, scientists have continued to improve diagnostic accuracy, detection speed, and cost.

Image Credit: Hanna Karpiak/Shutterstock.com What happens after HIV infection?

The immune system produces antibodies after encountering harmful foreign substances or antigens. HIV infects the vital cells associated with immunity, such as macrophages, helper T cells, and dendritic cells, and disrupts their function. The three important HIV antigens are p24, gp 41, and gp 120.2

HIV is a slow-replicating retrovirus that is transmitted through sexual intercourse, sharing an infected needle, or by blood transfer.3 After HIV infection, the viral load cannot be measured immediately due to low plasma load. Typically, the viral RNA can be measured within 10 to 12 days after infection.4

Antibodies to p24 and gp 41 are the first serological markers used to detect HIV infection. IgG antibodies appear approximately three weeks after infection. In the majority of HIV-infected individuals, HIV antibodies appear to circulate within 1 to 2 months of the infection. However, in a few cases, it may take up to six months to appear at a detectable level.5 Evolution of HIV diagnostic assays

Over the years, scientists have developed many immunoassays and nucleic acid amplification tests (NAATs) to accurately and high-throughput HIV diagnosis. These tests are broadly divided into two categories, namely, screening and confirmatory tests. Typically, HIV tests are performed on blood, oral fluids, or urine samples.6

HIV screening is performed by various immunoassays that focus on detecting IgG antibodies against HIV-1 antigens in the serum. Techniques such as Western blot, line immunoassay (LIA), and recombinant immunoblot are used as confirmatory tests.7 Some of the important HIV diagnostic assays are discussed below: Serological testing for HIV

In the mid-1980s, simple serological tests for HIV antibodies were developed based on culture-derived viral antigen preparation.7 These tests enabled HIV diagnosis and assessed blood and blood product supplies. Since the early assays, various serological assays have been developed that aided simple/rapid testing, high-throughput screening, confirmatory tests, incidence determination, and epidemiological surveillance. Since its first development, five generations of enzyme immunoassays (EIAs) have emerged based on varied antigen preparations and detection chemistries.8

First-generation assays: The first-generation EIAs detect IgG antibodies from antigens derived from whole viral lysates of HIV-positive cultures. Since crude antigen lysate contains impurities, this method exhibited reduced specificity and high false positivity. In contrast, immunofluorescence assays or Western blotting (WB) have shown higher specificity and lower false positivity.

Second-generation assays: Second-generation assays involve the use of recombinant proteins or synthetic peptides derived from the immunodominant regions (IDR) of HIV-1 proteins and gp36 of HIV-2, which increases sensitivity and decreases false positivity.

Third-generation assays: Third-generation assays, including the Genetic Systems HIV-1/HIV-2 Plus O EIA, use a variety of antigens to detect HIV-1 and -2 antibodies in the serum. A major advantage of third-generation sandwich format assays is their ability to detect HIV-1 IgM antibodies early, enabling quicker HIV diagnosis.

Fourth-generation assays: The fourth-generation EIAs, including the Abbott Architect HIV Ag/Ab Combo assay, utilize fully automated chemiluminescent microparticle technology that can instantaneously identify antibodies to HIV-1 and HIV-2 and HIV-1 p24 antigen. This technique has further allowed early HIV diagnosis. Other advantages of fourth-generation high-throughput assays are their capacity to perform more than 150 tests per hour and their ability to test specimens immediately upon arrival and generate results within 30 minutes.  These assays are suitable for facilities, such as blood banks, that handle high volumes of blood samples.

Fifth-generation assays: Fifth-generation assays, such as the Bio-Rad BioPlex 2200 HIV Ag-Ab assay, use magnetic beads coated with p24 monoclonal antibodies and epitopes specific for HIV-1 and HIV-2. This type of assay has a major advantage in  that it can confirm HIV infection in a single test. Interested in Assay Kits? Explore Equipment Here

Despite the advancements in EIA assays, the challenges associated with the generation of false positive results persist. Therefore, EIA-reactive specimen is typically retested with supplemental tests, such as Western Blot. Rapid diagnostic tests Related StoriesSweden exceeds UNAIDS HIV goals but faces new challengesNutrition's pivotal role in combating tuberculosis: addressing N-AIDS for better outcomes

The first HIV rapid test was available in the early 1990s. It determined an individual's serostatus before surgery, maternal labor/delivery, and organ transplant. Rapid diagnostics is based on immunochromatographic technology that uses blood from finger pricks to assess HIV status. 9 This test can provide results in less than 30 minutes and can be used in point-of-care (POC) settings. Since this test presents both false positive and negative results, it is essential to confirm the findings with laboratory-based HIV assays.

The main advantage of this technique is that any non-laboratory staff can perform it in a primary health care center. Even though decentralization of HIV diagnostic services has increased HIV test service in remote areas, it has been challenged by the lack of national guidelines, waste disposal, inventory management, and quality assurance (QA) monitoring.10

HIV self-testing, based on rapid testing methods, has allowed individuals who would otherwise refrain from testing in fear of discrimination to perform the test privately and start proper intervention. The World Health Organization (WHO) has prequalified several HIV rapid tests for HIV self-testing, including the Insti HIV-1/HIV-2 antibody tests and the Oraquick rapid HIV-1/2 antibody test.10 Nucleic acid test (NAT)

The NAT identifies HIV nucleic acid, i.e., either RNA or proviral DNA, in the blood sample. This test is based on the principles of polymerase chain reaction (PCR), nucleic acid sequence-based amplification, or ligase chain reaction.11 This test has proved to be vital in situations when an antibody against HIV is absent in serum. NAT is also performed in newborns of HIV-infected mothers. Unlike other assays, this test can detect HIV even after recent or possible exposure to the virus. Furthermore, NAT can quantify viral load.

Revolutions in Infectious Disease Testing Conclusions

The advancements in HIV diagnostic assays have played a vital role in identifying, staging, and monitoring infected individuals, even when they are under antiretroviral therapy. These assays have played an important role in surveillance and identification of transmission hot spots. Extraordinary progress in HIV testing methodologies has not only reduced false positives but decreased assessment time as well. References Sharp PM, Hahn BH. Origins of HIV and the AIDS pandemic. Cold Spring Harb Perspect Med. 2011;1(1):a006841. doi: 10.1101/cshperspect.a006841. Foster JE., et al. Viruses as Pathogens: Animal Viruses, With Emphasis on Human Viruses. Viruses. 2018; 157-187. doi.org/10.1016/B978-0-12-811257-1.00007-3 Dasgupta A, Wahed. Human immunodeficiency virus (HIV) and hepatitis testing. Clinical Chemistry, Immunology and Laboratory Quality Control (Second Edition). 2021; 513-533. doi.org/10.1016/B978-0-12-815960-6.00015-7 Konrad BP, et al. On the duration of the period between exposure to HIV and detectable infection. Epidemics. 2017; 20, 73-83. doi.org/10.1016/j.epidem.2017.03.002 Davis LE. Acute viral meningitis and encephalitis. Infections of the Nervous System, 1987; 156-176. doi.org/10.1016/B978-0-407-02293-5.50014-3 Pant PN. Oral fluid-based rapid HIV testing: issues, challenges and research directions. Expert Review of Molecular Diagnostics. 2007; 7 (4), 325-328, DOI: 10.1586/14737159.7.4.325 Abdullah DM, et al. The contemporary immunoassays for HIV diagnosis: a concise overview. Asian Biomed (Res Rev News). 2023;17(1):3-12. doi: 10.2478/abm-2023-0038. Alexander TS. Human Immunodeficiency Virus Diagnostic Testing: 30 Years of Evolution. Clin Vaccine Immunol. 2016;23(4):249-53. doi: 10.1128/CVI.00053-16. Aidoo S, et al. Suitability of a rapid immunochromatographic test for detection of antibodies to human immunodeficiency virus in Ghana, West Africa. J Clin Microbiol. 2001;39(7):2572-5. doi: 10.1128/JCM.39.7.2572-2575.2001. Parekh BS, et al. Diagnosis of Human Immunodeficiency Virus Infection. Clin Microbiol Rev. 2018;32(1):e00064-18. doi: 10.1128/CMR.00064-18. Garrett, P. E. Quality control for nucleic acid tests: Common ground and special issues. Journal of Clinical Virology. 2001; 20(1-2), 15-21. doi.org/10.1016/S1386-6532(00)00150-5

Further ReadingAll HIV ContentThe Economic Impacts of AIDSRecent Advancements in Treating HIV

Last Updated: Nov 29, 2024

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Sports

If college football’s playoff system ain’t broke, why fix it?

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If college football's playoff system ain't broke, why fix it?

During college football’s Bowl Championship Series era, the sport’s opposition to an expanded, let alone expansive, playoff could be summarized in one colorful quote by then-Ohio State president E. Gordon Gee.

“They will wrench a playoff system out of my cold, dead hands,” Gee said in 2007.

We are happy to report that while college football does, indeed, have a playoff, Gee is still very much alive. The 81-year-old retired just this week after a second stint leading West Virginia University.

What is dead and buried, though, is college football’s staunch resistance to extending its postseason field. After decades of ignoring complaints and the promise of additional revenue to claim that just two teams was more than enough, plans to move from 12 participants to 16 were underway before last season’s inaugural 12-teamer even took place.

A once-static sport now moves at light speed, future implications be damned.

Fire. Ready. Aim.

So maybe the best bit of current news is that college football’s two ruling parties — the SEC and Big Ten — can’t agree on how the new 16-team field would be selected. It has led to a pause on playoff expansion.

Maybe, just maybe, it means no expansion will occur by 2026, as first planned, and college football can let the 12-team model cook a little to accurately assess what changes — if any — are even needed.

“We have a 12-team playoff, five conference champions,” SEC commissioner Greg Sankey said this week. “That could stay if we can’t agree.”

Good. After all, what’s the rush?

The 2025 season will play out with a 12-team format featuring automatic bids for five conference champions and seven at-large spots. Gone is last year’s clunky requirement that the top four seeds could go only to conference champs — elevating Boise State and Arizona State and unbalancing the field.

That alone was progress built on real-world experience. It should be instructive.

The SEC wants a 16-team model but with, as is currently the case, automatic bids going to the champions in the ACC, Big 12, Big Ten, SEC and the best of the so-called Group of 6. The rest of the field would be at-large selections.

The Big Ten says it will not back such a proposal until the SEC agrees to play nine conference games (up from its current eight). Instead, it wants a 16-team system that gives four automatic bids apiece to the Big Ten and SEC, two each to the ACC and Big 12, one to the Group of 6 and then three at-large spots.

It’s been dubbed the “4-4-2-2-1-3” because college athletic leaders love ridiculous parlances almost as much as they love money.

While the ACC, Big 12 and others have offered opinions — mostly siding with the SEC — legislatively, the decision rests with the sport’s two big-dog conferences.

Right now, neither side is budging. A compromise might still be made, of course. The supposed deadline to set the 2026 system is Nov. 30. And Sankey actually says he prefers the nine-game SEC schedule, even if his coaches oppose it.

However, the possibility of the status quo standing for a bit longer remains.

What the Big Ten has proposed is a dramatic shift for a sport that has been bombarded with dramatic shifts — conference realignment, the transfer portal, NIL, revenue sharing, etc.

The league wants to stage multiple “play-in” games on conference championship weekend. The top two teams in the league would meet for the league title (as is currently the case), but the third- and fourth-place teams would play the fifth- and sixth-place teams to determine the other automatic bids.

Extend this out among all the conferences and you have up to a 26-team College Football Playoff (with 22 teams in a play-in situation). This would dramatically change the way the sport works — devaluing the stakes for nonconference games, for example. And some mediocre teams would essentially get a playoff bid — in the Big Ten’s case, the sixth seed last year was an Iowa team that finished 8-5.

Each conference would have more high-value inventory to sell to broadcast partners, but it’s not some enormous windfall. Likewise, four more first-round playoff games would need to find television slots and relevance.

Is anyone sure this is necessary? Do we need 16 at all, let alone with multibids?

In the 12-team format, the first round wasn’t particularly competitive — with a 19.3-point average margin of victory. It’s much like the first round of the NFL playoffs, designed mostly to make sure no true contender is left out.

Perhaps last year was an outlier. And maybe future games will be close. Or maybe they’ll be even more lopsided. Wouldn’t it be prudent to find out?

While there were complaints about the selection committee picking SMU and/or Indiana over Alabama, it wasn’t some egregious slight. Arguments will happen no matter how big the field. Besides, the Crimson Tide lost to two 6-6 teams last year. Expansion means a team with a similar résumé can cruise in.

Is that a good thing?

Whatever the decision, it is being made with little to no real-world data — pro or con. Letting a few 12-team fields play out, providing context and potentially unexpected consequences, sure wouldn’t hurt.

You don’t have to be Gordon Gee circa 2007 to favor letting this simmer and be studied before leaping toward another round of expansion.

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Arch to victory? Texas preseason pick to win SEC

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Arch to victory? Texas preseason pick to win SEC

Texas, with Heisman Trophy candidate Arch Manning set to take over as starting quarterback, is the preseason pick to win the Southeastern Conference championship.

The Longhorns received 96 of the 204 votes cast from media members covering the SEC media days this week to be crowned SEC champion on Dec. 6 in Atlanta at Mercedes-Benz Stadium. Georgia, with 44 votes, received the second-most votes.

If that scenario plays out, it would mean a rematch of the 2024 SEC championship game, which Georgia won in an overtime thriller. The SEC championship game pits the two teams with the best regular-season conference record against one another.

Alabama was third with 29 votes, while LSU got 20. South Carolina was next with five, while Oklahoma received three and Vanderbilt and Florida each got two votes. Tennessee, Ole Miss and Auburn each received one vote.

Since 1992, only 10 times has the predicted champion in the preseason poll gone on to win the SEC championship.

The 2024 SEC title game averaged 16.6 million viewers across ABC and ESPN, the fourth-largest audience on record for the game. The overtime win for Georgia, which peaked with 19.7 million viewers, delivered the largest audience of the college football season.

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World

Every shop and home burned or ransacked: The Syrian city engulfed in tribal violence

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Every shop and home burned or ransacked: The Syrian city engulfed in tribal violence

The Syrian presidency has announced it’s assembling a special taskforce to try to stop nearly a week of sectarian clashes in the southern Druze city of Sweida.

The presidency called for restraint on all sides and said it is making strenuous efforts to “stop the fighting and curb the violations that threaten the security of the citizens and the safety of society”.

By early Saturday morning, a ceasefire had been confirmed by the US special envoy for Syria, Tom Barrack, who posted on X that Syrian President Ahmed al Sharaa and Israeli Prime Minister Benjamin Netanyahu had agreed to a ceasefire supported by US secretary of state Marco Rubio.

The post went on to state that this agreement had the support of “Turkey, Jordan and its neighbours” and called upon the Druze, Bedouins, and Sunni factions to put down their arms.

Sky News special correspondent Alex Crawford reports from the road leading to Sweida, the city that has become the epicentre of Syria’s sectarian violence.

For the past 24 hours, we’ve watched as Syria‘s multiple Arab tribes began mobilising in the Sweida province to help defend their Bedouin brethren.

A fighter aims a gun
A body is wrapped in a blanket

Thousands travelled from multiple different Syrian areas and had reached the edge of Sweida city by Friday nightfall after a day of almost non-stop violent clashes and killings.

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“We have come to protect the [Arab] Bedouin women and children who are being terrorised by the Druze,” they told us.

A fighter in Syria
Image:
Arab fighters said they had come to protect the Bedouin women and children

Fighters at a gas station
Image:
Fighters at a petrol station

Every shop and every home in the streets leading up to Sweida city has been burned or ransacked, the contents destroyed or looted.

We saw tribal fighters loading the back of pickup trucks and driving away from the city with vehicles packed with looted goods from Druze homes.

A burning building
Image:
Shops and homes leading up to Sweida city have been burned or ransacked

A burned out car

Several videos posted online showed violence against the Druze, including one where tribal fighters force three men to throw themselves off a high-rise balcony and are seen being shot as they do so.

Doctors at the nearby community hospital in Buser al Harir said there had been a constant stream of casualties being brought in. As we watched, another dead fighter was carried out of an ambulance.

The medics estimated there had been more than 600 dead in their area alone. “The youngest child who was killed was a one-and-a-half-year-old baby,” one doctor told us.

A doctor talks to Sky's Alex Crawford
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Doctors said there had been a constant stream of casualties due to violence

The violence is the most dangerous outbreak of sectarian clashes since the fall of the Bashar al Assad regime last December – and the most serious challenge for the new leader to navigate.

The newly brokered deal is aimed at ending the sectarian killings and restoring some sort of stability in a country which is emerging from more than a decade of civil war.

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